PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00016.53
Common NameAMTR_s00016p00092590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ERF
Protein Properties Length: 190aa    MW: 20717.2 Da    PI: 8.9767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00016.53genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-2052100355
                                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                              y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  evm_27.model.AmTr_v1.0_scaffold00016.53  52 YRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAVAYDKAALRFKG 100
                                              9*******.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-2251109IPR016177DNA-binding domain
SMARTSM003802.4E-3951114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3351109IPR001471AP2/ERF domain
CDDcd000189.69E-3451109No hitNo description
PfamPF008471.3E-1251100IPR001471AP2/ERF domain
PROSITE profilePS5103224.85651108IPR001471AP2/ERF domain
PRINTSPR003676.4E-125263IPR001471AP2/ERF domain
PRINTSPR003676.4E-127490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MELPLSLSLS RVERVPCKRE EEPQNPISQL TEEGIININT TTTTTNVKKR NYRGVRQRPW  60
GKWAAEIRDP KKAARVWLGT FDTAEDAAVA YDKAALRFKG TKAKLNFPER VQSSSIVNQF  120
MGPEVGATPV LSPASYPEIY QYAELLRGSG EEVENSGPGF GVFEEKKPVV GSKSESSSSG  180
FGSGTSWSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2847113168ATERF1
3gcc_A2e-2847113168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623403.11e-126PREDICTED: ethylene-responsive transcription factor ERF114
SwissprotQ9FH547e-40EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLW1PGB81e-136W1PGB8_AMBTC; Uncharacterized protein
STRINGGSMUA_Achr6P08140_0012e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.18e-32ERF family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]